Package: BBI 0.3.0

Tristan Cordier

BBI: Benthic Biotic Indices Calculation from Composition Data

Set of functions to calculate Benthic Biotic Indices from composition data, obtained whether from morphotaxonomic inventories or sequencing data. Based on reference ecological weights publicly available for a set of commonly used marine biotic indices, such as AMBI (A Marine Biotic Index, Borja et al., 2000) <doi:10.1016/S0025-326X(00)00061-8> NSI (Norwegian Sensitivity Index) and ISI (Indicator Species Index) (Rygg 2013, <ISBN:978-82-577-6210-0>). It provides the ecological quality status of the samples based on each BBI as well as the normalized Ecological Quality Ratio.

Authors:Tristan Cordier [aut, cre]

BBI_0.3.0.tar.gz
BBI_0.3.0.zip(r-4.5)BBI_0.3.0.zip(r-4.4)BBI_0.3.0.zip(r-4.3)
BBI_0.3.0.tgz(r-4.4-any)BBI_0.3.0.tgz(r-4.3-any)
BBI_0.3.0.tar.gz(r-4.5-noble)BBI_0.3.0.tar.gz(r-4.4-noble)
BBI_0.3.0.tgz(r-4.4-emscripten)BBI_0.3.0.tgz(r-4.3-emscripten)
BBI.pdf |BBI.html
BBI/json (API)

# Install 'BBI' in R:
install.packages('BBI', repos = c('https://trtcrd.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/trtcrd/bbi/issues

Datasets:
  • metab - Subset of metabarcoding data
  • morpho - Subset of morphologic inventories data

On CRAN:

2.85 score 1 stars 14 scripts 249 downloads 2 exports 8 dependencies

Last updated 6 years agofrom:2c508aefd6. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 17 2024
R-4.5-winOKNov 17 2024
R-4.5-linuxOKNov 17 2024
R-4.4-winOKNov 17 2024
R-4.4-macOKNov 17 2024
R-4.3-winOKNov 17 2024
R-4.3-macOKNov 17 2024

Exports:BBInEQR

Dependencies:clusterlatticeMASSMatrixmgcvnlmepermutevegan