Package: BBI 0.3.0

Tristan Cordier

BBI: Benthic Biotic Indices Calculation from Composition Data

Set of functions to calculate Benthic Biotic Indices from composition data, obtained whether from morphotaxonomic inventories or sequencing data. Based on reference ecological weights publicly available for a set of commonly used marine biotic indices, such as AMBI (A Marine Biotic Index, Borja et al., 2000) <doi:10.1016/S0025-326X(00)00061-8> NSI (Norwegian Sensitivity Index) and ISI (Indicator Species Index) (Rygg 2013, <ISBN:978-82-577-6210-0>). It provides the ecological quality status of the samples based on each BBI as well as the normalized Ecological Quality Ratio.

Authors:Tristan Cordier [aut, cre]

BBI_0.3.0.tar.gz
BBI_0.3.0.zip(r-4.5)BBI_0.3.0.zip(r-4.4)BBI_0.3.0.zip(r-4.3)
BBI_0.3.0.tgz(r-4.4-any)BBI_0.3.0.tgz(r-4.3-any)
BBI_0.3.0.tar.gz(r-4.5-noble)BBI_0.3.0.tar.gz(r-4.4-noble)
BBI_0.3.0.tgz(r-4.4-emscripten)BBI_0.3.0.tgz(r-4.3-emscripten)
BBI.pdf |BBI.html
BBI/json (API)

# Install 'BBI' in R:
install.packages('BBI', repos = c('https://trtcrd.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/trtcrd/bbi/issues

Datasets:
  • metab - Subset of metabarcoding data
  • morpho - Subset of morphologic inventories data

On CRAN:

2.70 score 1 stars 10 scripts 190 downloads 2 exports 8 dependencies

Last updated 6 years agofrom:2c508aefd6. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-winOKOct 31 2024
R-4.5-linuxOKOct 31 2024
R-4.4-winOKOct 31 2024
R-4.4-macOKOct 31 2024
R-4.3-winOKOct 31 2024
R-4.3-macOKOct 31 2024

Exports:BBInEQR

Dependencies:clusterlatticeMASSMatrixmgcvnlmepermutevegan