Package: BBI 0.3.0
Tristan Cordier
BBI: Benthic Biotic Indices Calculation from Composition Data
Set of functions to calculate Benthic Biotic Indices from composition data, obtained whether from morphotaxonomic inventories or sequencing data. Based on reference ecological weights publicly available for a set of commonly used marine biotic indices, such as AMBI (A Marine Biotic Index, Borja et al., 2000) <doi:10.1016/S0025-326X(00)00061-8> NSI (Norwegian Sensitivity Index) and ISI (Indicator Species Index) (Rygg 2013, <ISBN:978-82-577-6210-0>). It provides the ecological quality status of the samples based on each BBI as well as the normalized Ecological Quality Ratio.
Authors:
BBI_0.3.0.tar.gz
BBI_0.3.0.zip(r-4.5)BBI_0.3.0.zip(r-4.4)BBI_0.3.0.zip(r-4.3)
BBI_0.3.0.tgz(r-4.5-any)BBI_0.3.0.tgz(r-4.4-any)BBI_0.3.0.tgz(r-4.3-any)
BBI_0.3.0.tar.gz(r-4.5-noble)BBI_0.3.0.tar.gz(r-4.4-noble)
BBI_0.3.0.tgz(r-4.4-emscripten)BBI_0.3.0.tgz(r-4.3-emscripten)
BBI.pdf |BBI.html✨
BBI/json (API)
| # Install 'BBI' in R: |
| install.packages('BBI', repos = c('https://trtcrd.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/trtcrd/bbi/issues
Last updated 4 months agofrom:e421a37b3b. Checks:8 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 23 2025 |
| R-4.5-win | OK | Feb 23 2025 |
| R-4.5-mac | OK | Feb 23 2025 |
| R-4.5-linux | OK | Feb 23 2025 |
| R-4.4-win | OK | Feb 23 2025 |
| R-4.4-mac | OK | Feb 23 2025 |
| R-4.3-win | OK | Feb 23 2025 |
| R-4.3-mac | OK | Feb 23 2025 |
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| BBI | BBI |
| Subset of metabarcoding data | metab |
| Subset of morphologic inventories data | morpho |
| nEQR | nEQR |